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Database Importer
[Data
Exchange]
This chapter contains all relevant
information on the classes offering various importer
functionality. More...
Classes |
|
| class | BNPP::BINDReader |
| Importer class for bind xml format.
More... |
|
| class | BNPP::BINDReaderHandlers |
| Handler class for the bind xml
format. More... |
|
| class | BNPP::BioBaseDBAdapter |
| Database Adapter for Biobase
databases. More... |
|
| class | BNPP::TransfacDBAdapter |
| Database Adapter for the TransFac
database. More... |
|
| class | BNPP::TranspathDBAdapter |
| Database Adapter for the TransPath
database. More... |
|
| class | BNPP::CAPMapper |
| Mapper for the CAP database.
More... |
|
| class | BNPP::DNAChipMapper |
| Mapper for Amersham DNA chip data. More... |
|
| class | BNPP::DNAChipParser |
| Parser for Amersham DNA chip data. More... |
|
| class | BNPP::DNAChipReader |
| Reader for Amersham DNA chip data. More... |
|
| class | BNPP::DBAdapter |
| DBAdapter is the
superclass for all database adapters. More... |
|
| class | BNPP::InterProParser |
| SwissParser reads the
InterPro files. More... |
|
| class | BNPP::InterProParserHandler |
| Handler class for the InterPro xml
format. More... |
|
| class | BNPP::KeggDBAdapter |
| KeggDBAdapter is an
importer class for kegg flat files. More... |
|
| class | BNPP::KeggCompound |
| KeggCompound
represents all compound objects contained in the KEGG data
base. More... |
|
| class | BNPP::KeggMapTitle |
| Class KeggMapTitle
represents titles of all contained standard maps or
pathways in the KEGG data base. More... |
|
| class | BNPP::KeggGlycan |
| KeggGlycan represents a
kind of compounds - glycans. More... |
|
| class | BNPP::KeggEnzyme |
| KeggEnzyme represents
all enzyme classes contained in the KEGG data base.
More... |
|
| class | BNPP::KeggOrganism |
| KeggOrganism
represents organism specific information in KEGG data base.
More... |
|
| class | BNPP::KeggTaxonomy |
| KeggTaxonomy
represents taxonomies of organisms contained in the KEGG
data base. More... |
|
| class | BNPP::KeggReference |
| KeggReference
represents publications mentioned in the KEGG data base.
More... |
|
| class | BNPP::KeggChromosome |
| KeggChromosome
represents in the KEGG data base contained information
about chromosomes. More... |
|
| class | BNPP::KeggPlasmid |
| KeggPlasmid represents
plasmid objects in the KEGG database. More... |
|
| class | BNPP::KeggGenome |
| KeggGenome represents
all in the KEGG data base contained genomes. More... |
|
| class | BNPP::KeggReaction |
| KeggReaction
represents all in KEGG data base contained reaction
objects. More... |
|
| class | BNPP::KeggGene |
| KeggGene represents all
gene objects contained in KEGG data base. More... |
|
| class | BNPP::KeggMetaPathway |
| KeggMetaPathway
represents meta pathways of KEGG data base, that are not
organism specific and serve only as a scheme for the
orientation to describe, which reactions may be involved in
a pathway (e.g. More... |
|
| class | BNPP::KeggPathway |
| Organism specific
pathways, containing the gene lists which code the enzymes
given in the meta pathway's enzyme list. More... |
|
| class | BNPP::SimpleKeggMapper |
| SimpleKeggMaper writes the kernel
classes containing the KEGG database into the BN++
database. More... |
|
| class | BNPP::BNPPReader |
| class for converting kernel objects
into the internal MIF 1.0 structure. More... |
|
| class | BNPP::BNPPWriter |
| class for writing the MIF Objects
into BN++ Kernal object. More... |
|
| class | BNPP::MIF::MIF |
| abstract MIF class More... |
|
| class | BNPP::MIF::dbReferenceType |
| dbReferenceType
class representation More... |
|
| class | BNPP::MIF::xrefType |
| xrefType class
representation More... |
|
| class | BNPP::MIF::attributeType |
| attributeType
class representation More... |
|
| class | BNPP::MIF::bibrefType |
| bibrefType class
representation More... |
|
| class | BNPP::MIF::namesType |
| namesType class
representation More... |
|
| class | BNPP::MIF::cvType |
| cvType class
representation More... |
|
| class | BNPP::MIF::openCvType |
| openCvType class
representation More... |
|
| class | BNPP::MIF::baseLocationType |
| baseLocationType
class representation More... |
|
| class | BNPP::MIF::featureType |
| featureType
class representation More... |
|
| class | BNPP::MIF::bioSourceType |
| bioSourceType
class representation More... |
|
| class | BNPP::MIF::sourceType |
| sourceType class
representation More... |
|
| class | BNPP::MIF::availabilityType |
| availabilityType
class representation More... |
|
| class | BNPP::MIF::experimentType |
| experimentType
class representation More... |
|
| class | BNPP::MIF::proteinInteractorType |
| proteinInteractorType
class representation More... |
|
| class | BNPP::MIF::proteinParticipantType |
| proteinParticipantType
class representation More... |
|
| class | BNPP::MIF::interactionElementType |
| interactionElementType
class representation More... |
|
| class | BNPP::MIF::entry |
| entry class representation More... |
|
| class | BNPP::MIF::entrySet |
| entrySet class
representation More... |
|
| class | BNPP::MIFReader |
| class for reading the MIF 1.0 xml
format. More... |
|
| class | BNPP::MIFReaderHandler |
| Handler class for the MIF 1.0 xml
format. More... |
|
| class | BNPP::MIFWriter |
| class for writing the MIF 1.0 xml
format. More... |
|
| class | BNPP::RefSeqDBAdapter |
| RefSeqDBAdapter is
derived from DBAdapter. More... |
|
| class | BNPP::SwissParser |
| SwissParser reads the
SwissProt files. More... |
|
| class | BNPP::SwissParserHandler |
| Handler class for the SwissProt xml
format. More... |
|
Enumerations |
|
| enum | BNPP::MIF::roleType { unspecified, bait, prey, neutral } |
| roleType as enum
representation |
|
| enum | BNPP::MIF::LocationType
{ begin, beginInterval, end, endInterval, position, positionInterval, site, notset } |
| LocationType enum
representation. |
|
