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Kernel Classes
This chapter contains all relevant information on BN++ kernel datastructures. More...
Classes |
|
| class | BNPP::AATRNA |
| Aminoacyl tRNA. More... |
|
| class | BNPP::Activator |
| An Activator is a positive
Regulator that controls
an event. More... |
|
| class | BNPP::ActivatorTF |
| ActivatorTF: Molecule
capable of activating the transcription of a gene by
activating the transcription factor. More... |
|
| class | BNPP::Active |
| Possible StateProperty.
More... |
|
| class | BNPP::Artificial |
| Artificial is one kind
of Source
for a biochemical object. More... |
|
| class | BNPP::BentTo |
| Used to describe if one part of a
Thing is
bent to another part of the same Thing. More... |
|
| class | BNPP::BindingSite |
| Binding site: Locality on a
protein's surface that attracts another molecule of
whatever type and leads to a docking of the two. More... |
|
| class | BNPP::Bound |
| Used to describe that Participants
are bound to each other. More... |
|
| class | BNPP::Catalyst |
| A substance which increases the rate
of a reaction without itself being consumed and without
altering the equilibrium of the reaction. More... |
|
| class | BNPP::CDNA |
| We have three definitions of cDNAs
derived from two diferent sources. More... |
|
| class | BNPP::CDNAClone |
| cDNA clone is a duplex DNA, representing an mRNA,
carried in a cloning vector. More... |
|
| class | BNPP::CDNALibrary |
| A collection of all of the mRNA
molecules present in a cell or organism, all turned into
cDNA molecules with the enzyme reverse transcriptase, then
inserted into vectors (other DNA molecules which can
continue to replicate after addition of foreign DNA). More... |
|
| class | BNPP::CellCycleState |
| Possible State. More... |
|
| class | BNPP::Centromere |
| The region in eukaryote chromosomes
where daughter chromatids are joined together. More... |
|
| class | BNPP::ChromatinStructure |
| ChromatinStructure
is a possible NAStateProperty.
More... |
|
| class | BNPP::ChromosomalLocation |
| ChromosomalLocation
is a meta information and contains chromosomallocations of
things. More... |
|
| class | BNPP::Chromosome |
| The DNA of eukaryotes is subdivided
into chromosomes, presumably for convenience of handling,
each of which has a long length of DNA associated with various
proteins. More... |
|
| class | BNPP::Cofactor |
| Inorganic complement of an enzyme
reaction, usually a metal ion. More... |
|
| class | BNPP::Coiling |
| Coiling describes the
coiling of a dna moecule. More... |
|
| class | BNPP::Collection |
| Collection is used to
group Participants by assigning their database source.
More... |
|
| class | BNPP::CompositeDataSourceKey |
| CompositeDataSourceKey
is used if a datasource has two keys. More... |
|
| class | BNPP::Compound |
| Compound describes all
biochemical compounds belonging not to Protein or NucleicAcid
classes. More... |
|
| class | BNPP::Concentration |
| Concentration of a
GenericCompound.
More... |
|
| class | BNPP::Condition |
| Condition represents
conditions for several biochemical processes like events or
pathways. More... |
|
| class | BNPP::ConformationalChange |
| Conformational change is the
alteration in the shape - usually the tertiary structure of
a protein - as a result of alteration in the environment
(pH, temperature, ionic strength) or the binding of a
ligand (to a receptor) or binding of substrate (to an
enzyme). More... |
|
| class | BNPP::ConsensusSequence |
| Of a series of related DNA, RNA or protein sequences, the
sequence that reflects the most common choice of base or
amino acid at each position. More... |
|
| class | BNPP::ConservedRegion |
| ConservedRegion
represents conserved sub parts in sequences. More... |
|
| class | BNPP::ConservedRegionPosition |
| ConservedRegionPosition
describes the position of a conserved sequence defined by
the class ConservedRegion in
a concrete sequence. More... |
|
| class | BNPP::ControlEvent |
| Describes events like activation or
inhibition of other participants or of regulative events on
transcription level. More... |
|
| class | BNPP::ControlSource |
| ControlSource is the
source of any kind of control event, eg. More... |
|
| class | BNPP::ControlTarget |
| ControlTarget is the
target for any kind of control event, eg. More... |
|
| class | BNPP::CytosineMethylation |
| CytosineMethylation
is given as a percentage. More... |
|
| class | BNPP::DataSet |
| A DataSet is a class which
sum up a set of Things. More... |
|
| class | BNPP::DataSource |
| DataSource is a meta
information and describes where the associated Virtual
Things were taken from. More... |
|
| class | BNPP::DataSourceKey |
| DataSourceKey is a
meta information and contains an "id" - data_source_key -
for an object taken from a database. More... |
|
| class | BNPP::Definition |
| Definition is a meta
information and contains definitions of things. More... |
|
| class | BNPP::Description |
| Description is a meta
information. More... |
|
| class | BNPP::DevelopmentState |
| Possible State. More... |
|
| class | BNPP::Disease |
| The class Disease is a meta
information and describes diseases. More... |
|
| class | BNPP::DNA |
| The genetic material of all cells
and many viruses. More... |
|
| class | BNPP::DNAConsensusSequence |
| Dna consensus sequence reflects the
most common choice of base or amino acid at each position.
More... |
|
| class | BNPP::Domain |
| Domains are used to describe a part
of a molecule or structure that shares common
physicochemical features, eg. More... |
|
| class | BNPP::DomainClass |
| DomainClass is a
classification of domains. More... |
|
| class | BNPP::DownRegulation |
| DownRegulation -
negative regulation of a participant on the transcriptional
level. More... |
|
| class | BNPP::Educt |
| Educt is one kind of
Substrate. More... |
|
| class | BNPP::Effect |
| Effect arosen after a
biochemical event or pathway. More... |
|
| class | BNPP::Enhancer |
| Enhancer: A DNA control element
frequently found 5' to the start site of a gene, which when
bound by a specific transcription factor, enhances the
levels of expression of the gene, but is not sufficient
alone to cause expression. More... |
|
| class | BNPP::Enzyme |
| A biological catalyst, most often a
protein although ribozymes are RNA molecules. More... |
|
| class | BNPP::EnzymeClass |
| EnzymeClass is a
classification for Enzymes. More... |
|
| class | BNPP::EST |
| We have three definitions of ESTs
derived from three diferent sources. More... |
|
| class | BNPP::Event |
| The class Event is the basis class of
all biochemical events like reactions, regulatory events,
interactions etc. More... |
|
| class | BNPP::EventEquation |
| Characterizes the equation of an
event. More... |
|
| class | BNPP::EventType |
| EventType is a
classification of events. More... |
|
| class | BNPP::EventTypeCollection |
| EventTypeCollection
collects several classifications of biochemical events.
More... |
|
| class | BNPP::Exon |
| Exon: The sequences of the
RNA primary
transcript (or the DNA that encodes them) that
exit the nucleus as part of a messenger RNA molecule. More... |
|
| class | BNPP::Experiment |
| Experiment is a
MetaInformation.
More... |
|
| class | BNPP::ExperimentalCondition |
| Describes experimental conditions of
an event or path. More... |
|
| class | BNPP::ExperimentalFunction |
| Experimental role is a parent class
for all roles specifying molecules and other participants
within a event observed in an experiment. More... |
|
| class | BNPP::Expression |
| The full use of the information in a
gene via transcription and translation leading to
production of a protein and hence the appearance of the
phenotype determined by that gene (contains sub events
Transcription,
Splicing, Translation ).
More... |
|
| class | BNPP::ExpressionExperiment |
| An ExpressionExperiment
describe a number of Things observed during an expression
experiment, like DNA chip experiments. More... |
|
| class | BNPP::ExpressionProduct |
| Role for the event Expression
played by a molecule have been expressed and coded by a
gene or RNA
(ExpressionScheme).
More... |
|
| class | BNPP::ExpressionScheme |
| Role for the event Expression
played by a gene or RNA coding the expressed
molecule (ExpressionProduct).
More... |
|
| class | BNPP::FeedbackLoop |
| Possible RegulatoryPathway.
More... |
|
| class | BNPP::Filter |
| The Filter class represents a
filter in a Query. More... |
|
| class | BNPP::Formula |
| Formula contains the
formula of a participant. More... |
|
| class | BNPP::FoundationsForNucDistrMatrix |
| Represents foundations for
nucleotide distribution matrices for the binding sites of
transcription factors. More... |
|
| class | BNPP::FunctionalDescription |
| The class FunctionalDescription
is a kind or description and describes functions of things.
More... |
|
| class | BNPP::Gene |
| Gene is originally defined as
the physical unit of heredity but the meaning has changed
with increasing knowledge; it is probably best defined as
the unit of inheritance that occupies a specific locus on a
chromosome, the existence of which can be confirmed by the
occurrence of different allelic forms. More... |
|
| class | BNPP::GeneProductPolymorphism |
| Polymorphisms in polypeptide
sequences. More... |
|
| class | BNPP::GeneProductSequence |
| GeneProductSequence
represents sequence information of gene products. More... |
|
| class | BNPP::GenericCompound |
| GenericCompound is
the base class for all biochemical compounds. More... |
|
| class | BNPP::GeneticLocus |
| GeneticLocus is the
position of a gene on a chromosome, plasmid or on an other
nucleic acid molecule. More... |
|
| class | BNPP::GeneVariant |
| Different forms or variants of a
gene found at the same place, or locus, on a chromosome.
More... |
|
| class | BNPP::Genome |
| Genome represents the total
set of genes carried by an individual or cell. More... |
|
| class | BNPP::GlobalContainer |
| Global container. More... |
|
| class | BNPP::GRNA |
| gRNA (= Guide RNA): Small RNA molecules (60-80
nucleotides) that are found in the editosome. More... |
|
| class | BNPP::Histology |
| Histology of an Thing. More... |
|
| class | BNPP::HistoneModification |
| HistoneModification,
given in percentage per modification type. More... |
|
| class | BNPP::HNRNA |
| heterogenous nuclear RNA (= hnRNA): Originally
identified as a class of RNA, found in the nucleus but
not the nucleolus, which is rapidly labelled and with a
very wide range of sizes, 2-40 kilobases. More... |
|
| class | BNPP::Homologues |
| Homologue - Homologues proteins have
evolved from a common ancestor, and their evolutionary
relationship is evident from similarities in sequence,
structure and/or function. More... |
|
| class | BNPP::Hybridization |
| The Class Hybridization
describes hybridization processes observed on micro array
chips. More... |
|
| class | BNPP::ImmunRegulation |
| Describes the immun_regulation
process. More... |
|
| class | BNPP::Individual |
| Individual is a 'single
instance' of an organism group. More... |
|
| class | BNPP::Inducer |
| Inducers are molecules that cause an
increase in a protein activity when added to cells.
More... |
|
| class | BNPP::Inhibitor |
| An Inhibitor is a negative
Regulator that controls
an event. More... |
|
| class | BNPP::InhibitorTF |
| InhibitorTF: Molecule
capable of preventing the transcription of a gene by
blocking the transcription factor. More... |
|
| class | BNPP::Interaction |
| Interactions are for example
Reactions, Protein-Protein-Interactions or
Protein-Molecule-Interactions. More... |
|
| class | BNPP::InteractionPathway |
| Collection of
interactions. More... |
|
| class | BNPP::Intron |
| (= intervening sequence) A
non-coding sequence of DNA within a gene (cf. More... |
|
| class | BNPP::Isoform |
| Isoform: A protein having
the same function and similar (or identical sequence), but
the product of a different gene and (usually)
tissue-specific. More... |
|
| class | BNPP::Isolator |
| An Isolator blocks an
Enhancer. More... |
|
| class | BNPP::Location |
| Location describes the
location of several things. More... |
|
| class | BNPP::LocationStateProperty |
| StateProperty for
Locations. More... |
|
| class | BNPP::LocationType |
| Eg, CellType, OrganType, . More... |
|
| class | BNPP::MainEduct |
| MainEduct is one kind of
Educt.
More... |
|
| class | BNPP::MainProduct |
| MainProduct is one kind
of Product. More... |
|
| class | BNPP::MetabolicPathway |
| Collection of metaboic
events - reactions. More... |
|
| class | BNPP::MetaInformation |
| MetaInformation is
the base class for all additional information for a thing,
for example publications, db links, etc. More... |
|
| class | BNPP::Method |
| The class Method is a meta information
and describes biochemical methods or techniques used to
derive the information about the concerning Thing associated to the
respective method object via the association inharited from
the class MetaInformation.
More... |
|
| class | BNPP::MiRNA |
| miRNA (= microRNA): These are tiny
(~22 nts) RNA molecules that appear to
regulate the expression of messenger RNA (mRNA) molecules. More... |
|
| class | BNPP::Modification |
| Describes the modification process.
More... |
|
| class | BNPP::ModifiedForm |
| Modifiedform is the source of any
kind of control event, eg. More... |
|
| class | BNPP::MRNA |
| Single-stranded RNA molecule that specifies the
amino acid sequence of one or more polypeptide chains.
More... |
|
| class | BNPP::Mutation |
| Describes the mutation process.
More... |
|
| class | BNPP::NAConsensusSequence |
| Nucleic acid consensus sequence
reflects the most common choice of base or amino acid at
each position. More... |
|
| class | BNPP::Name |
| Name contains a name string
for a Thing. More... |
|
| class | BNPP::NAPolymorphism |
| NAPolymorphism
represents polymorphisms in nucleic acid sequences (see the
definition of polymorphism). More... |
|
| class | BNPP::NASecondaryStructure |
| NASecondaryStructure
describes the secondary structure of nucleic acid. More... |
|
| class | BNPP::NAStateProperty |
| NAStateProperty: A
cavity or space within a tube or sac. More... |
|
| class | BNPP::NegativeControlEvent |
| Negative control (inhibition) of an
participant (event). More... |
|
| class | BNPP::NucDistributionMatrix |
| Represents nucleotide distribution
matrices for the binding sites of transcription factors.
More... |
|
| class | BNPP::NucleicAcid |
| More abstract class for nucleic
acids describing more general information of nucleic acid
objects. More... |
|
| class | BNPP::NucleicAcidSequence |
| NucleicAcidSequence
represents sequence information of nucleic acids. More... |
|
| class | BNPP::Open |
| Possible StateProperty.
More... |
|
| class | BNPP::Operator |
| The site on DNA to which a specific
repressor protein binds and prevents the initiation of
transcription at the adjacent promoter. More... |
|
| class | BNPP::Operon |
| Operon represents groups of
bacterial genes with a common promotor, that are controlled
as a unit and produce mRNA as a single piece, polycistronic
messenger. More... |
|
| class | BNPP::ORF |
| ORF (open reading frame) is a
possible reading frame of DNA which is capable of being
translated into protein, ie. More... |
|
| class | BNPP::Organ |
| Organ is a unit consisting of
various cells and tissues with different structure and
fulfilling specific functions. More... |
|
| class | BNPP::Organism |
| Organism is a meta
information and describes objects being in relationship
with this organism. More... |
|
| class | BNPP::ORI |
| ORI ( = origin of replication)
Regions of DNA that are necessary for its
replication to begin, such as pBR322 ori , required for
plasmid replication. More... |
|
| class | BNPP::Orthologues |
| Orthologue - Orthologs are
equivalent genes in different species that evolved from a
common ancestor by speciation. More... |
|
| class | BNPP::Paralogues |
| Paralogue - Homologous sequences
(that is, sequences that share a common evolutionary
ancestor) that diverged by gene duplication (within one
organism). More... |
|
| class | BNPP::Participant |
| Participant describes
objects taking part in biochemical events. More... |
|
| class | BNPP::ParticipantClassification |
| ParticipantClassification
allows the classification of a Participant. More... |
|
| class | BNPP::PartOf |
| Used to represent 'part of'
relations between Things. More... |
|
| class | BNPP::Pathway |
| Pathway is the base class
for all biochemical pathways. More... |
|
| class | BNPP::PeripherallyAssociated |
| Used to describe that Participants
are near by each other. More... |
|
| class | BNPP::PhysicalTrigger |
| PhysicalTrigger
represents objects acting as physical triggers in
biochemical events. More... |
|
| class | BNPP::PhysicalTriggerType |
| PhysicalTriggerType
is a classification of physical triggers. More... |
|
| class | BNPP::PhysiologicalProperty |
| PhysiologicalProperty
is a LocationStateProperty.
More... |
|
| class | BNPP::Plasmid |
| Plasmid is a small,
independently-replicating, piece of cytoplasmic DNA that can be
transferred from one organism to another. More... |
|
| class | BNPP::Polymerase |
| A biological catalyst, most often a
protein although ribozymes are RNA molecules. More... |
|
| class | BNPP::Polymorphism |
| There are two definitions of
Polymorphism. More... |
|
| class | BNPP::PositiveControlEvent |
| Positive control (activation) of an
participant (event). More... |
|
| class | BNPP::PrimaryTranscript |
| PrimaryTranscript
(= pre-RNA) is the product of eukaryotic transcription
before post-transcriptional modifications take place.
More... |
|
| class | BNPP::Product |
| Product is one kind of
Substrate. More... |
|
| class | BNPP::Promoter |
| A region of DNA to which RNA polymerase binds
before initiating the transcription of DNA into RNA. More... |
|
| class | BNPP::PromoterClass |
| PromoterClass is a
classification for promoters. More... |
|
| class | BNPP::Protein |
| Protein is any of a group
of complex organic compounds, consisting essentially of
combinations of amino acids in peptide linkages, that
contain carbon, hydrogen, oxygen, nitrogen, and usually
sulfur. More... |
|
| class | BNPP::ProteinClassification |
| ProteinClassification
can, eg, be ProteinFamily or
EnzymeClass. More... |
|
| class | BNPP::ProteinClassificationCollection |
| ProteinClassificationCollection
collects several classifications of proteins.
More... |
|
| class | BNPP::ProteinComplex |
| a complex of different proteins
More... |
|
| class | BNPP::ProteinConsensusSequence |
| Protein consensus sequence
reflects the most common choice of base or amino acid at
each position. More... |
|
| class | BNPP::ProteinFamily |
| ProteinFamily is a
classification for Proteins as used in 'Gene Ontology' or
'SwissProt'. More... |
|
| class | BNPP::ProteinPolymorphism |
| ProteinPolymorphism
represents polymorphisms in protein sequences (see the
definition of polymorphism). More... |
|
| class | BNPP::ProteinSequence |
| ProteinSequence
represents sequence information of proteins. More... |
|
| class | BNPP::Publication |
| Publication: Publication
is a DataSource and a
MetaInformation.
More... |
|
| class | BNPP::Query |
| The Query class represents a
query to the BNPP-database. More... |
|
| class | BNPP::Reaction |
| Describes biochemical reactions,
containing essential roles Educt and Product. More... |
|
| class | BNPP::Rearrangement |
| Describes the rearrangement process.
More... |
|
| class | BNPP::RegulativeEvent |
| RegulativeEvent is
a control event on transcription level with positive or
negative effect on the SignalReceptor
(ControlTarget in
control event). More... |
|
| class | BNPP::Regulator |
| A Regulator controls an
event. More... |
|
| class | BNPP::RegulatoryElement |
| A RegulatoryElement
regulates an event. More... |
|
| class | BNPP::RegulatoryPathway |
| Collection of regulatory
events. More... |
|
| class | BNPP::Reliability |
| Reliability is one kind
of MetaInformation and
gives a reability estimation for a thing. More... |
|
| class | BNPP::Repressor |
| Repressor: Eg repressor
protein, a protein that binds to an operator of a gene
preventing the transcription of the gene. More... |
|
| class | BNPP::RNA |
| This molecular species has an
informational role, a structural role and an enzymic role
and is thus used in a more versatile way than either
DNA or
proteins. More... |
|
| class | BNPP::RNAConsensusSequence |
| Rna consensus sequence reflects the
most common choice of base or amino acid at each position.
More... |
|
| class | BNPP::Role |
| Role describes the 'functional
role' played by a Participant in a
biochemical Event. More... |
|
| class | BNPP::RRNA |
| rRNA (ribosomal RNA) is one of the structural
components of the ribosome. More... |
|
| class | BNPP::SAR |
| Scaffold/matrix attached regions
(S/MARs) represent a relatively novel addition to the class
of cis-acting DNA sequences in the eukaryotic
genome. More... |
|
| class | BNPP::SCRNA |
| scRNA: Small cytoplasmic RNA; any one of
several small cytoplasmic RNA molecules present in the
cytoplasm and (sometimes) nucleus of a eukaryote. More... |
|
| class | BNPP::Sequence |
| Sequence represents
sequence information of proteins and nucleic acids and
consensus sequences. More... |
|
| class | BNPP::SequenceUnit |
| SequenceUnit
represents a part of a sequence, eg intron, exon,
terminator . More... |
|
| class | BNPP::SideEduct |
| SideEduct is one kind of
Educt.
More... |
|
| class | BNPP::SideProduct |
| SideProduct is one kind
of Product. More... |
|
| class | BNPP::SignalEffector |
| A SignalEffector
induces a signal. More... |
|
| class | BNPP::SignalPeptide |
| SignalPeptide: A
peptide present on proteins that are destined either to be
secreted or to be membrane components. More... |
|
| class | BNPP::SignalReceptor |
| A SignalReceptor is
the recipient of a signal. More... |
|
| class | BNPP::SignalTransductionPathway |
| Possible RegulatoryPathway.
More... |
|
| class | BNPP::SignificantPathwayPoint |
| The class SignificantPathwayPoint
describes specific points of a pathway like start point or
target point. More... |
|
| class | BNPP::Silencer |
| A Silencer blocks the
transcription. More... |
|
| class | BNPP::SNoRNA |
| snoRNA (small nucleolar RNA): Small nuclear
RNAs that are involved in the processing of pre-ribosomal
RNA in the
nucleolus. More... |
|
| class | BNPP::SNP |
| SNPs (Single Nucleotide
Polymorphisms) are common DNA sequence variations among
individuals. More... |
|
| class | BNPP::SNRNA |
| snRNA - small nuclear RNA is involved in the
machinery that processes RNA's as they travel between the
nucleus and the cytoplasm. More... |
|
| class | BNPP::Source |
| Source is a meta information
and defines where a certain object comes from. More... |
|
| class | BNPP::SourceDatabase |
| SourceDatabase is
one kind of DataSource. More... |
|
| class | BNPP::SpecificationEventCondition |
| SpecificationEventCondition
specifies a condition of an event. More... |
|
| class | BNPP::SpecificationPathwayCondition |
| SpecificationPathwayCondition
specifies a condition of an pathway. More... |
|
| class | BNPP::SpecificationProcessCondition |
| SpecificationProcessCondition
is a virtual class for specification or description of
processes with a certain condition. More... |
|
| class | BNPP::SpecificationRoleState |
| SpecificationRoleState
specifies the state of the role in an event. More... |
|
| class | BNPP::Splicing |
| Describes the splicing process by
which introns are removed from hnRNA to produce mature
messenger RNA that contains only exons.
More... |
|
| class | BNPP::StartPoint |
| The class StartPoint describes
start points of a pathway. More... |
|
| class | BNPP::StartPointParticipant |
| The class StartPointParticipant
describes start points of a pathway specified by a
participant object. More... |
|
| class | BNPP::StartPointRole |
| The class StartPointRole
describes start points of a pathway specified by a role
object. More... |
|
| class | BNPP::State |
| Describes states of a participant in
an biochemical event. More... |
|
| class | BNPP::StateProperty |
| Properties of a State. More... |
|
| class | BNPP::StrandBreak |
| Describes the strand_break process.
More... |
|
| class | BNPP::SubSequencePosition |
| SubSequencePosition
describes the position of a sub sequence in their 'parent'
sequence. More... |
|
| class | BNPP::Substrate |
| Substrate is one kind of
Role.
More... |
|
| class | BNPP::SystematicGroup |
| Class SystematicGroup
represents Linnaean taxonomic system. More... |
|
| class | BNPP::Tag |
| Tag is a sub class of the class
ExperimentalFunction.
More... |
|
| class | BNPP::TargetPoint |
| The class TargetPoint describes
target points of a pathway. More... |
|
| class | BNPP::TargetPointParticipant |
| The class TargetPointParticipant
describes target points of a pathway specified by a
participant object. More... |
|
| class | BNPP::TargetPointRole |
| The class TargetPointRole
describes target points of a pathway specified by a role
object. More... |
|
| class | BNPP::Telomere |
| A Telomere is the end of a
chromosome. More... |
|
| class | BNPP::TemplateForModification |
| Modifiedform is the source of any
kind of control event, eg. More... |
|
| class | BNPP::TemporaryDependency |
| Temporary dependency. More... |
|
| class | BNPP::Terminator |
| Terminator: DNA sequence at the
end of a transcription unit that causes RNA polymerase to stop
transcription. More... |
|
| class | BNPP::Thing |
| Thing is the base class for
all other BNPP classes. More... |
|
| class | BNPP::Transcription |
| Transcription event
describes the synthesis of RNA by RNA polymerases using a
DNA
template. More... |
|
| class | BNPP::TranscriptionFactor |
| Protein required for
recognition by RNA polymerases of specific
stimulatory sequences in eukaryotic genes. More... |
|
| class | BNPP::TranscriptionFactorClass |
| TranscriptionFactorClass
is a classification for TranscriptionFactors as, eg, used
in TransPath. More... |
|
| class | BNPP::TranscriptionUnit |
| A region of DNA that is transcribed to
produce a single primary RNA transcript, ie. More... |
|
| class | BNPP::Translation |
| The Class Translation describes a
tranlation process that occurs at the ribosome whereby the
information in mRNA is used to specify the sequence of
amino acids in a polypeptide chain. More... |
|
| class | BNPP::Translocation |
| Translocation means
transport of a compound or participant from one location to
an other (target) location. More... |
|
| class | BNPP::TRNA |
| tRNA (= transfer RNA; s-RNA; 4S RNA): The low molecular
weight RNAs that specifically bind amino acids by
amino-acylation to form aminoacyl tRNA, and that possess a
special nucleotide triplet, the anticodon, sometimes
containing the base inosine. More... |
|
| class | BNPP::UpRegulation |
| UpRegulation -
positive regulation of a participant on the transcription
level. More... |
|
| class | BNPP::UserData |
| UserData is one kind of
DataSource. More... |
|
attributes |
|
| float | BNPP::TranscriptionActivity::value |
| Positive values represent number of
transcripts per second. |
|
Detailed Description
This chapter contains all relevant information on BN++ kernel datastructures.
The hierarchy of the kernel classes looks like this:
Variable Documentation
|
|
Positive values represent number of transcripts per second. Negative values can be used for a qualitative description: -1 for a week transcription, -10 for maximal activation. |
